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_check_solution() (bicm.graph_classes.BipartiteGraph method)
_clean_root() (bicm.graph_classes.BipartiteGraph method)
_compute_projected_pvals_mat() (bicm.graph_classes.BipartiteGraph method)
_equations_root() (bicm.graph_classes.BipartiteGraph method)
_initialize_fitnesses() (bicm.graph_classes.BipartiteGraph method)
_initialize_graph() (bicm.graph_classes.BipartiteGraph method)
_initialize_node_dictionaries() (bicm.graph_classes.BipartiteGraph method)
_initialize_problem() (bicm.graph_classes.BipartiteGraph method)
_jacobian_root() (bicm.graph_classes.BipartiteGraph method)
_projection_calculator() (bicm.graph_classes.BipartiteGraph method)
_projection_from_pvals() (bicm.graph_classes.BipartiteGraph method)
_pvals_validator() (bicm.graph_classes.BipartiteGraph method)
_residuals_jacobian() (bicm.graph_classes.BipartiteGraph method)
_set_initial_guess() (bicm.graph_classes.BipartiteGraph method)
_set_parameters() (bicm.graph_classes.BipartiteGraph method)
_set_solved_problem() (bicm.graph_classes.BipartiteGraph method)
_solve_bicm_full() (bicm.graph_classes.BipartiteGraph method)
_solve_bicm_light() (bicm.graph_classes.BipartiteGraph method)
_solve_root() (bicm.graph_classes.BipartiteGraph method)
A
adjacency_list_from_adjacency_list_bipartite() (in module bicm.network_functions)
adjacency_list_from_biadjacency() (in module bicm.network_functions)
adjacency_list_from_edgelist_bipartite() (in module bicm.network_functions)
B
biadjacency_from_adjacency_list() (in module bicm.network_functions)
biadjacency_from_edgelist() (in module bicm.network_functions)
bicm.graph_classes
module
bicm.models_functions
module
bicm.network_functions
module
bicm.poibin
module
bicm.solver_functions
module
bicm_from_fitnesses() (in module bicm.network_functions)
BipartiteGraph (class in bicm.graph_classes)
biwcm_c_from_fitnesses() (in module bicm.network_functions)
biwcm_d_from_fitnesses() (in module bicm.network_functions)
C
cdf() (bicm.poibin.PoiBin method)
check_input_prob() (bicm.poibin.PoiBin method)
check_rv_input() (bicm.poibin.PoiBin method)
check_sol() (bicm.graph_classes.BipartiteGraph static method)
check_sol_light() (bicm.graph_classes.BipartiteGraph method)
check_xi_are_real() (bicm.poibin.PoiBin static method)
clean_edges() (bicm.graph_classes.BipartiteGraph method)
compute_projection() (bicm.graph_classes.BipartiteGraph method)
compute_weighted_pvals_mat() (bicm.graph_classes.BipartiteGraph method)
D
degree_reduction() (bicm.graph_classes.BipartiteGraph method)
E
edgelist_from_adjacency_list_bipartite() (in module bicm.network_functions)
edgelist_from_biadjacency() (in module bicm.network_functions)
edgelist_from_biadjacency_fast() (in module bicm.network_functions)
edgelist_from_edgelist_bipartite() (in module bicm.network_functions)
eqs_root() (in module bicm.models_functions)
G
get_argz_sum() (bicm.poibin.PoiBin method)
get_bicm_fitnesses() (bicm.graph_classes.BipartiteGraph method)
get_bicm_matrix() (bicm.graph_classes.BipartiteGraph method)
get_cdf() (bicm.poibin.PoiBin method)
get_chi() (bicm.poibin.PoiBin method)
get_cols_projection() (bicm.graph_classes.BipartiteGraph method)
get_d() (bicm.poibin.PoiBin method)
get_fitnesses() (bicm.graph_classes.BipartiteGraph method)
get_pmf_xi() (bicm.poibin.PoiBin method)
get_projected_pvals_mat() (bicm.graph_classes.BipartiteGraph method)
get_rows_projection() (bicm.graph_classes.BipartiteGraph method)
get_validated_matrix() (bicm.graph_classes.BipartiteGraph method)
get_weighted_pvals_mat() (bicm.graph_classes.BipartiteGraph method)
get_z() (bicm.poibin.PoiBin method)
I
initialize_avg_mat() (bicm.graph_classes.BipartiteGraph method)
iterative_bicm() (in module bicm.models_functions)
iterative_bicm_exp() (in module bicm.models_functions)
iterative_biwcm_c() (in module bicm.models_functions)
iterative_biwcm_c_exp() (in module bicm.models_functions)
iterative_biwcm_d() (in module bicm.models_functions)
iterative_biwcm_d_exp() (in module bicm.models_functions)
J
jac_root() (in module bicm.models_functions)
L
linsearch_fun_BiCM() (in module bicm.models_functions)
linsearch_fun_BiCM_exp() (in module bicm.models_functions)
linsearch_fun_BiCM_exp_fixed() (in module bicm.models_functions)
linsearch_fun_BiCM_fixed() (in module bicm.models_functions)
loglikelihood_bicm() (in module bicm.models_functions)
loglikelihood_bicm_exp() (in module bicm.models_functions)
loglikelihood_biwcm_c() (in module bicm.models_functions)
loglikelihood_biwcm_c_exp() (in module bicm.models_functions)
loglikelihood_biwcm_d() (in module bicm.models_functions)
loglikelihood_biwcm_d_exp() (in module bicm.models_functions)
loglikelihood_hessian_bicm() (in module bicm.models_functions)
loglikelihood_hessian_bicm_exp() (in module bicm.models_functions)
loglikelihood_hessian_biwcm_c() (in module bicm.models_functions)
loglikelihood_hessian_biwcm_c_exp() (in module bicm.models_functions)
loglikelihood_hessian_biwcm_d() (in module bicm.models_functions)
loglikelihood_hessian_biwcm_d_exp() (in module bicm.models_functions)
loglikelihood_hessian_diag_bicm() (in module bicm.models_functions)
loglikelihood_hessian_diag_bicm_exp() (in module bicm.models_functions)
loglikelihood_hessian_diag_biwcm_c() (in module bicm.models_functions)
loglikelihood_hessian_diag_biwcm_c_exp() (in module bicm.models_functions)
loglikelihood_hessian_diag_biwcm_d() (in module bicm.models_functions)
loglikelihood_hessian_diag_biwcm_d_exp() (in module bicm.models_functions)
loglikelihood_prime_bicm() (in module bicm.models_functions)
loglikelihood_prime_bicm_exp() (in module bicm.models_functions)
loglikelihood_prime_biwcm_c() (in module bicm.models_functions)
loglikelihood_prime_biwcm_c_exp() (in module bicm.models_functions)
loglikelihood_prime_biwcm_d() (in module bicm.models_functions)
loglikelihood_prime_biwcm_d_exp() (in module bicm.models_functions)
M
made_bicm() (in module bicm.models_functions)
made_biwcm_c() (in module bicm.models_functions)
made_biwcm_d() (in module bicm.models_functions)
mase_biwcm_c() (in module bicm.models_functions)
mase_biwcm_d() (in module bicm.models_functions)
matrix_regulariser_function() (in module bicm.solver_functions)
matrix_regulariser_function_eigen_based() (in module bicm.solver_functions)
model_loglikelihood() (bicm.graph_classes.BipartiteGraph method)
module
bicm.graph_classes
bicm.models_functions
bicm.network_functions
bicm.poibin
bicm.solver_functions
mrde_bicm() (in module bicm.models_functions)
mrde_biwcm_c() (in module bicm.models_functions)
mrde_biwcm_d() (in module bicm.models_functions)
mrse_biwcm_c() (in module bicm.models_functions)
mrse_biwcm_d() (in module bicm.models_functions)
P
pmf() (bicm.poibin.PoiBin method)
PoiBin (class in bicm.poibin)
pval() (bicm.poibin.PoiBin method)
pval_calculator() (bicm.graph_classes.BipartiteGraph method)
pval_calculator_poibin() (bicm.graph_classes.BipartiteGraph method)
S
sample_bicm() (in module bicm.network_functions)
sample_bicm_edgelist() (in module bicm.network_functions)
sample_bicm_edgelist_names() (in module bicm.network_functions)
set_adjacency_list() (bicm.graph_classes.BipartiteGraph method)
set_biadjacency_matrix() (bicm.graph_classes.BipartiteGraph method)
set_degree_sequences() (bicm.graph_classes.BipartiteGraph method)
set_edgelist() (bicm.graph_classes.BipartiteGraph method)
set_to_continuous() (bicm.graph_classes.BipartiteGraph method)
solve_bicm() (bicm.graph_classes.BipartiteGraph method)
solve_tool() (bicm.graph_classes.BipartiteGraph method)
solver() (in module bicm.solver_functions)
sufficient_decrease_condition() (in module bicm.solver_functions)
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